Tation on the affinity between Ras and RBD, we measured the

Tation on the affinity between Ras and RBD, we measured the affinity between purified sfGFP-HRas without the CAAX membrane targeting sequence and mRFP-RBD or its mutations in the presence of either non-hydrolyzable GTP analog (Gpp(NH)p) or GDP using fluorescence lifetime measurements 1379592 in a cuvette (Figure 1D; Table 1). We found that the effect of K108A on the affinity of RBD for HRas was relatively minor (RBDR59A: 2.0 mM; 1.7 mM). The affinity of FRas2-M RBDR59A,R108A: (RBDK65E,R108A) was ,0.5 mM, in between FRas (RBDWT; ,0.2 mM) and FRas-F, as expected [14]. Table 1. Dissociation constants between HRas and RBD or several RBD mutations.Oltipraz 2-photon Fluorescence Lifetime Imaging MicroscopyA custom-built 2-photon microscope equipped with a Ti:sapphire pulsed laser (MaiTai; Spectra-Physics, Fremont, CA) tuned at 920 nm and a mode-locked Ytterbium-doped laser (1030 nm; Amplitude Systemes, Bordeaux, France) were used for imaging ` mEGFP and mRFP distribution, respectively, in 293T cells. The intensity of each laser beam was independently controlled with electro-optical modulators (350-80 LA; Conoptics, Danbury, CT). The two laser beams were combined using a beam-splitting cube and passed through the same set of galvano-scanning mirrors and objective (606, 0.9 NA; Olympus, Melville, NY). Imaging of dissociated cultures of cortical neurons were performed on a different custom-built two-photon microscope with a Ti:sapphire pulsed laser (MaiTai; Spectra-Physics, Fremont, CA) tuned to 920 nm for imaging of mEGFP- and mRFP-tagged MedChemExpress Lixisenatide constructs. Fluorescence was divided with a dichroic mirror (565 nm; Chroma) and detected by photomultiplier tubes (PMTs; H742240 (Hamamatsu) for green, R3896 (Hamamtsu) for red) after wavelength filters (HQ510/70-2p for green and HQ620/90-2p for red; Chroma Techonology, Brattleboro, VT) [23]. Fluorescence signal was acquired by ScanImage [24] using a data acquisition board (PCI-6110, National Instruments). Fluorescence lifetime images were acquired using a time-correlated single photon counting board (SPC-150; Becker-Hickl) controlled with a custom software integrated into ScanImage [13,25].Sensor FRas FRas-F FRas2-F FRas2-MMutations in RBD None R59A R59A,K108A K65E,K108AHRas-Gpp(NH)p Kd (mM) ,0.2 2.0 1.7 0.HRas-GDP Kd (mM) 16 31 25Fluorescence Lifetime Image AnalysisTo generate the fluorescence lifetime image, we calculated the mean photon arrival time, StT, in each pixel as:Dissociation constants (Kd) were measured as in Figure 1D (averages of 3? independent experiments). doi:10.1371/journal.pone.0052874.tAn Improved Ras Sensor for FLIMTo test the sensitivity of FRas2 variants (FRas2-F and FRas2-M) compared to that of FRas and FRas-F, we transfected these Ras FRET sensors in 293T cells, and imaged them with 2-photon fluorescence lifetime imaging microscopy 1527786 (2pFLIM) (Figure 2). To activate Ras in 293T cells, we measured Ras activation in response to bath application of EGF [13,27]. As reported [13], application of EGF (100 ng/ml) increased the binding between mRFP-RBDmRFP and mEGFP-HRas, indicating that Ras is activated (Figure 2A ). FRas2-F shows higher binding fraction than FRas-F both before and after EGF stimulation, presumably due to higher acceptor concentration in the cytosol (Figure 2A ). Further, FRas2-M showed a greater increase in binding fraction after EGF application compared to other sensors (Figure 2A ). Thus, these results indicate that the new FRas2-M sensor has improved sensitivity. Since Ras signaling is i.Tation on the affinity between Ras and RBD, we measured the affinity between purified sfGFP-HRas without the CAAX membrane targeting sequence and mRFP-RBD or its mutations in the presence of either non-hydrolyzable GTP analog (Gpp(NH)p) or GDP using fluorescence lifetime measurements 1379592 in a cuvette (Figure 1D; Table 1). We found that the effect of K108A on the affinity of RBD for HRas was relatively minor (RBDR59A: 2.0 mM; 1.7 mM). The affinity of FRas2-M RBDR59A,R108A: (RBDK65E,R108A) was ,0.5 mM, in between FRas (RBDWT; ,0.2 mM) and FRas-F, as expected [14]. Table 1. Dissociation constants between HRas and RBD or several RBD mutations.2-Photon Fluorescence Lifetime Imaging MicroscopyA custom-built 2-photon microscope equipped with a Ti:sapphire pulsed laser (MaiTai; Spectra-Physics, Fremont, CA) tuned at 920 nm and a mode-locked Ytterbium-doped laser (1030 nm; Amplitude Systemes, Bordeaux, France) were used for imaging ` mEGFP and mRFP distribution, respectively, in 293T cells. The intensity of each laser beam was independently controlled with electro-optical modulators (350-80 LA; Conoptics, Danbury, CT). The two laser beams were combined using a beam-splitting cube and passed through the same set of galvano-scanning mirrors and objective (606, 0.9 NA; Olympus, Melville, NY). Imaging of dissociated cultures of cortical neurons were performed on a different custom-built two-photon microscope with a Ti:sapphire pulsed laser (MaiTai; Spectra-Physics, Fremont, CA) tuned to 920 nm for imaging of mEGFP- and mRFP-tagged constructs. Fluorescence was divided with a dichroic mirror (565 nm; Chroma) and detected by photomultiplier tubes (PMTs; H742240 (Hamamatsu) for green, R3896 (Hamamtsu) for red) after wavelength filters (HQ510/70-2p for green and HQ620/90-2p for red; Chroma Techonology, Brattleboro, VT) [23]. Fluorescence signal was acquired by ScanImage [24] using a data acquisition board (PCI-6110, National Instruments). Fluorescence lifetime images were acquired using a time-correlated single photon counting board (SPC-150; Becker-Hickl) controlled with a custom software integrated into ScanImage [13,25].Sensor FRas FRas-F FRas2-F FRas2-MMutations in RBD None R59A R59A,K108A K65E,K108AHRas-Gpp(NH)p Kd (mM) ,0.2 2.0 1.7 0.HRas-GDP Kd (mM) 16 31 25Fluorescence Lifetime Image AnalysisTo generate the fluorescence lifetime image, we calculated the mean photon arrival time, StT, in each pixel as:Dissociation constants (Kd) were measured as in Figure 1D (averages of 3? independent experiments). doi:10.1371/journal.pone.0052874.tAn Improved Ras Sensor for FLIMTo test the sensitivity of FRas2 variants (FRas2-F and FRas2-M) compared to that of FRas and FRas-F, we transfected these Ras FRET sensors in 293T cells, and imaged them with 2-photon fluorescence lifetime imaging microscopy 1527786 (2pFLIM) (Figure 2). To activate Ras in 293T cells, we measured Ras activation in response to bath application of EGF [13,27]. As reported [13], application of EGF (100 ng/ml) increased the binding between mRFP-RBDmRFP and mEGFP-HRas, indicating that Ras is activated (Figure 2A ). FRas2-F shows higher binding fraction than FRas-F both before and after EGF stimulation, presumably due to higher acceptor concentration in the cytosol (Figure 2A ). Further, FRas2-M showed a greater increase in binding fraction after EGF application compared to other sensors (Figure 2A ). Thus, these results indicate that the new FRas2-M sensor has improved sensitivity. Since Ras signaling is i.