Ing proteins, grouping them into families based on their structural domains

Ing proteins, grouping them into families based on their structural domains, and identifying their RNA targets and cellular roles, the functions of many conserved and clinically important RNA-binding proteins remain poorly understood. One such RNA-binding protein is the cellular nucleic acid binding protein CNBP (also called ZNF9, zinc finger nine). A CCTG repeat expansion in the CNBP first intron causes the autosomal dominant disease myotonic dystrophy type 2 (DM2) [1]. The presence of CCUG repeats in the CNBP pre-mRNA contribute to DM2 by sequestering the RNA-binding proteins MBNL1 (muscleblind-like 1) and CUGBP1 (CUG-binding protein 1) [4]. Although studies initially reported that CNBP levels were unaffected in cells and tissues from DM2 patients [5,6], other laboratories have found that CNBP protein and RNA levels are reduced in patient specimens [7?]. Intriguingly, mice in which one CNBP allele is inactivated display features of DM2, including myotonia and muscle wasting [10], suggesting that decreased CNBP could contribute to the disease. In support of a key cellular role, CNBP is essential for mouse development [11], and likely orthologs exist in many animal species and in fungi [12?5].Despite its potential importance and conservation, the function of CNBP remains poorly understood. CNBP is 18.7 kDa and consists largely of seven CCHC zinc knuckles (CX2CX4HX4C; C = Cys, H = His, X = any amino acid). Structural studies of similar zinc knuckles in retroviral nucleocapsid proteins and the Air2 subunit of the S. cerevisiae TRAMP poly(A) polymerase have revealed that they interact with single-stranded RNA [16] and can also be protein-protein interaction modules [17]. CNBP has been described to bind both single-stranded DNA and RNA, and biochemical assays have suggested roles for CNBP in numerous processes, including transcriptional regulation, translation and internal initiation of translation [7,9,18?5]. Similar to the mammalian protein, the roles of the fission and budding yeast CNBP orthologs remain under investigation. S. pombe Byr3, which is required for efficient conjugation of fission yeast, has been reported to both bind double-stranded DNA and to co-purify with the Dicer ribonuclease [12,26]. S. cerevisiae GIS2 (GIG Suppressor), which was discovered in a screen for high copy suppressors of a strain unable to grow in galactose [13], was reported to sediment with polyribosomes in yeast extracts and to substitute for CNBP in stimulating cap-independent translation in human cells [15]. Recently, using a combination of microarray experiments and proteomics, Gis2 was reported to interact with motifs in the coding sequences of hundreds of mRNAs and coordinate the expression of these mRNAs as part of an “RNA regulon” [27]. Because elucidation of the roles of CNBP and 1527786 its orthologs could be helpful for understanding DM2 pathogenesis, we examined the protein interactions and subcellular location of S. cerevisiae Gis2.Gis2 and CNBP Are Components of RNP GranulesWe report that Gis2 exhibits RNA-dependent interactions with the translation initiation factor eIF4G and the poly(A) binding protein Pab1. We identify Gis2 as a novel component of two cytoplasmic structures containing G007-LK web translationally repressed mRNPs, P-bodies and stress granules. Consistent with a functional ortholog, we show that CNBP also associates with the cytoplasmic poly(A) binding protein and localizes to stress granules upon arsenite buy GDC-0152 treatment of human cells. Our data ar.Ing proteins, grouping them into families based on their structural domains, and identifying their RNA targets and cellular roles, the functions of many conserved and clinically important RNA-binding proteins remain poorly understood. One such RNA-binding protein is the cellular nucleic acid binding protein CNBP (also called ZNF9, zinc finger nine). A CCTG repeat expansion in the CNBP first intron causes the autosomal dominant disease myotonic dystrophy type 2 (DM2) [1]. The presence of CCUG repeats in the CNBP pre-mRNA contribute to DM2 by sequestering the RNA-binding proteins MBNL1 (muscleblind-like 1) and CUGBP1 (CUG-binding protein 1) [4]. Although studies initially reported that CNBP levels were unaffected in cells and tissues from DM2 patients [5,6], other laboratories have found that CNBP protein and RNA levels are reduced in patient specimens [7?]. Intriguingly, mice in which one CNBP allele is inactivated display features of DM2, including myotonia and muscle wasting [10], suggesting that decreased CNBP could contribute to the disease. In support of a key cellular role, CNBP is essential for mouse development [11], and likely orthologs exist in many animal species and in fungi [12?5].Despite its potential importance and conservation, the function of CNBP remains poorly understood. CNBP is 18.7 kDa and consists largely of seven CCHC zinc knuckles (CX2CX4HX4C; C = Cys, H = His, X = any amino acid). Structural studies of similar zinc knuckles in retroviral nucleocapsid proteins and the Air2 subunit of the S. cerevisiae TRAMP poly(A) polymerase have revealed that they interact with single-stranded RNA [16] and can also be protein-protein interaction modules [17]. CNBP has been described to bind both single-stranded DNA and RNA, and biochemical assays have suggested roles for CNBP in numerous processes, including transcriptional regulation, translation and internal initiation of translation [7,9,18?5]. Similar to the mammalian protein, the roles of the fission and budding yeast CNBP orthologs remain under investigation. S. pombe Byr3, which is required for efficient conjugation of fission yeast, has been reported to both bind double-stranded DNA and to co-purify with the Dicer ribonuclease [12,26]. S. cerevisiae GIS2 (GIG Suppressor), which was discovered in a screen for high copy suppressors of a strain unable to grow in galactose [13], was reported to sediment with polyribosomes in yeast extracts and to substitute for CNBP in stimulating cap-independent translation in human cells [15]. Recently, using a combination of microarray experiments and proteomics, Gis2 was reported to interact with motifs in the coding sequences of hundreds of mRNAs and coordinate the expression of these mRNAs as part of an “RNA regulon” [27]. Because elucidation of the roles of CNBP and 1527786 its orthologs could be helpful for understanding DM2 pathogenesis, we examined the protein interactions and subcellular location of S. cerevisiae Gis2.Gis2 and CNBP Are Components of RNP GranulesWe report that Gis2 exhibits RNA-dependent interactions with the translation initiation factor eIF4G and the poly(A) binding protein Pab1. We identify Gis2 as a novel component of two cytoplasmic structures containing translationally repressed mRNPs, P-bodies and stress granules. Consistent with a functional ortholog, we show that CNBP also associates with the cytoplasmic poly(A) binding protein and localizes to stress granules upon arsenite treatment of human cells. Our data ar.